Genomics in the cloud : using docker, GATK, and WDL in terra / (Record no. 79993)
[ view plain ]
| 000 -LEADER | |
|---|---|
| fixed length control field | 01973nam a22002177a 4500 |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION | |
| fixed length control field | 220816b2020 |||||||| |||| 00| 0 eng d |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER | |
| International Standard Book Number | 9789352139934 |
| 082 ## - DEWEY DECIMAL CLASSIFICATION NUMBER | |
| Classification number | 004.6782 AUW-G |
| 100 ## - MAIN ENTRY--PERSONAL NAME | |
| Personal name | Auwera, Geraldine A. van der |
| 245 ## - TITLE STATEMENT | |
| Title | Genomics in the cloud : using docker, GATK, and WDL in terra / |
| Statement of responsibility, etc. | Geraldine A. Van der Auwera and Brian D. O'Connor |
| 260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT) | |
| Place of publication, distribution, etc. | Beijing |
| Name of publisher, distributor, etc. | O'Reilly and SPD |
| Date of publication, distribution, etc. | 2020 |
| 300 ## - PHYSICAL DESCRIPTION | |
| Extent | 467 p. |
| 365 ## - TRADE PRICE | |
| Price type code | INR |
| Price amount | 1750.00 |
| 500 ## - GENERAL NOTE | |
| General note | Data in the genomics field is booming. In just a few years, organizations such as the National Institutes of Health (NIH) will host 50+ petabytes—or over 50 million gigabytes—of genomic data, and they’re turning to cloud infrastructure to make that data available to the research community. How do you adapt analysis tools and protocols to access and analyze that volume of data in the cloud?<br/><br/>With this practical book, researchers will learn how to work with genomics algorithms using open source tools including the Genome Analysis Toolkit (GATK), Docker, WDL, and Terra. Geraldine Van der Auwera, longtime custodian of the GATK user community, and Brian O’Connor of the UC Santa Cruz Genomics Institute, guide you through the process. You’ll learn by working with real data and genomics algorithms from the field.<br/><br/>This book covers:<br/><br/>Essential genomics and computing technology background<br/>Basic cloud computing operations<br/>Getting started with GATK, plus three major GATK Best Practices pipelines<br/>Automating analysis with scripted workflows using WDL and Cromwell<br/>Scaling up workflow execution in the cloud, including parallelization and cost optimization<br/>Interactive analysis in the cloud using Jupyter notebooks<br/>Secure collaboration and computational reproducibility using Terra. |
| 650 ## - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Genomics |
| 650 ## - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Cloud computing |
| 650 ## - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Genomics--Data processing |
| 650 ## - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Big data |
| 650 ## - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | SPARK (Electronic resource) |
| 700 ## - ADDED ENTRY--PERSONAL NAME | |
| Personal name | O'Connor, Brian D. |
| 952 ## - LOCATION AND ITEM INFORMATION (KOHA) | |
| Withdrawn status | |
| Lost status | Source of classification or shelving scheme | Damaged status | Not for loan | Collection code | Home library | Current library | Shelving location | Date acquired | Full call number | Barcode | Date last seen | Price effective from | Koha item type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Dewey Decimal Classification | 003-007 | BITS Pilani Hyderabad | BITS Pilani Hyderabad | General Stack (For lending) | 16/08/2022 | 004.6782 AUW-G | 46059 | 13/07/2024 | 16/08/2022 | Books |